PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02400.1_g00008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 293aa    MW: 33250 Da    PI: 5.7616
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02400.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-18142191356
                      AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                              y+GVr++  +g+WvAeIr p++   r+r +lg+f+taeeAa a+++ + kl+g+
  Rsa1.0_02400.1_g00008.1 142 YRGVRQRQ-WGKWVAEIRKPRS---RARLWLGTFDTAEEAAMAYDRQAFKLRGH 191
                              9****999.**********954...4**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.49E-23141199IPR016177DNA-binding domain
SMARTSM003805.5E-38141204IPR001471AP2/ERF domain
PROSITE profilePS5103223.67141198IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-31141199IPR001471AP2/ERF domain
CDDcd000185.71E-34142199No hitNo description
PfamPF008471.7E-13142191IPR001471AP2/ERF domain
PRINTSPR003672.7E-11142153IPR001471AP2/ERF domain
PRINTSPR003672.7E-11164180IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MDFDEELNLC ITKGKSIDPS LGEASSTTSP RSIKKMKNPD HRSKPYLPFS SFSSSNSLPT  60
FPFSLNPTFQ NQQQLGYVPI NQQNNPTIQG HNQMISFGPQ LPQQQQQYMF RYWSDTLNLS  120
PRGRMMMMNQ ESVIPYSSTR LYRGVRQRQW GKWVAEIRKP RSRARLWLGT FDTAEEAAMA  180
YDRQAFKLRG HNATLNFPER FVDKEVEPND ETDASSSLHQ KKSETPQLNE PSEGSLESKE  240
VAVSDGGVEE GMAEAWFNAV AAGWGPESPL WDDLDNSQFS QSSTSSCPMR PFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-21142200362ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009144196.10.0PREDICTED: ethylene-responsive transcription factor ERF054-like
RefseqXP_013673941.10.0PREDICTED: ethylene-responsive transcription factor ERF054-like
SwissprotQ9M0J31e-134ERF54_ARATH; Ethylene-responsive transcription factor ERF054
TrEMBLM4EBX10.0M4EBX1_BRARP; Uncharacterized protein
STRINGBra026280.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21412775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28140.11e-121ERF family protein